javascript client library  (IDEAconsult Ltd)

Journal: BMC Bioinformatics

Article Title: LabKey Server: An open source platform for scientific data integration, analysis and collaboration

doi: 10.1186/1471-2105-12-71

Figure Lengend Snippet: A custom, interactive form for designing an R view . Part A of this figure shows an example of an interactive R chart designer. This particular interface (available only on Atlas) was created using the LabKey JavaScript client libraries. It allows users to create custom views of antibody binding data. Users employ a graphical form to select participants of interest, isotypes, antibodies and groupings for plots. The form sends user selections to a parameterized R script that runs on a joined view of relevant datasets. Part B of this figure shows the R view produced by this form. It shows binding antibody graphs by isotype (interferon alpha (IgA) and interferon gamma (IgB)) for two study participants. The graphs plot glycoprotein 41 reading values (GP41) and viral loads for each participant and each isotype against the number of days that have passed between enrolment of the participant in the study and the collection of the tested specimen. Participant identifiers in this figure have been modified to hide study participant identities.

Article Snippet: Figure shows customized, participant-specific views built by Atlas developers using LabKey Server's R interface and JavaScript client library.

Techniques: Binding Assay, Produced, Modification

Journal: BMC Bioinformatics

Article Title: LabKey Server: An open source platform for scientific data integration, analysis and collaboration

doi: 10.1186/1471-2105-12-71

Figure Lengend Snippet: Custom, per-participant views of data . Participant-specific summary views show all data available for a particular participant, typically along with visualizations. These views can be customized using the graphical interface or through custom scripts. This figure shows a custom view built on Atlas using LabKey Server's R interface and JavaScript client library. It is available only on Atlas. Clinical data for the selected participant are displayed alongside a graph that plots viral loads and CD4+ counts against the number of days from enrolment in the study to specimen collection. Users can toggle between different types of data ( e.g . , "Requested Specimens," "Binding Antibodies" or "Cytokines") using tabs. Just as in the per-participant views shown in Figure 10A and Figure 16, users can employ the "Previous Participant" and "Next Participant" links to progress to the same data summary for other participants in the study. The participant identifier in this image is not real and the physical information for the participant has been obscured.

Article Snippet: Figure shows customized, participant-specific views built by Atlas developers using LabKey Server's R interface and JavaScript client library.

Techniques: Binding Assay

Journal: BMC Bioinformatics

Article Title: LabKey Server: An open source platform for scientific data integration, analysis and collaboration

doi: 10.1186/1471-2105-12-71

Figure Lengend Snippet: A custom, interactive form for designing an R view . Part A of this figure shows an example of an interactive R chart designer. This particular interface (available only on Atlas) was created using the LabKey JavaScript client libraries. It allows users to create custom views of antibody binding data. Users employ a graphical form to select participants of interest, isotypes, antibodies and groupings for plots. The form sends user selections to a parameterized R script that runs on a joined view of relevant datasets. Part B of this figure shows the R view produced by this form. It shows binding antibody graphs by isotype (interferon alpha (IgA) and interferon gamma (IgB)) for two study participants. The graphs plot glycoprotein 41 reading values (GP41) and viral loads for each participant and each isotype against the number of days that have passed between enrolment of the participant in the study and the collection of the tested specimen. Participant identifiers in this figure have been modified to hide study participant identities.

Article Snippet: At present, the JavaScript client library is LabKey Server's most fully featured.

Techniques: Binding Assay, Produced, Modification

Journal: BMC Bioinformatics

Article Title: LabKey Server: An open source platform for scientific data integration, analysis and collaboration

doi: 10.1186/1471-2105-12-71

Figure Lengend Snippet: Custom, per-participant views of data . Participant-specific summary views show all data available for a particular participant, typically along with visualizations. These views can be customized using the graphical interface or through custom scripts. This figure shows a custom view built on Atlas using LabKey Server's R interface and JavaScript client library. It is available only on Atlas. Clinical data for the selected participant are displayed alongside a graph that plots viral loads and CD4+ counts against the number of days from enrolment in the study to specimen collection. Users can toggle between different types of data ( e.g . , "Requested Specimens," "Binding Antibodies" or "Cytokines") using tabs. Just as in the per-participant views shown in Figure 10A and Figure 16, users can employ the "Previous Participant" and "Next Participant" links to progress to the same data summary for other participants in the study. The participant identifier in this image is not real and the physical information for the participant has been obscured.

Article Snippet: At present, the JavaScript client library is LabKey Server's most fully featured.

Techniques: Binding Assay